- Phakopsora ampelopsidis
- Phakopsora apoda
- Phakopsora argentinensis
- Phakopsora arrabidaeae
- Phakopsora artemisiae
- Phakopsora brideliae
- Phakopsora burserae
- Phakopsora byttneriae
- Phakopsora chavesii
- Phakopsora cheoana
- Phakopsora cingens
- Phakopsora compressa
- Phakopsora cronartiiformis
- Phakopsora crotalariae
- Phakopsora crotonicola
- Phakopsora crotonis
- Phakopsora cupheae
- Phakopsora curcumae
- Phakopsora desmium
- Phakopsora ehretiae
- Phakopsora elephantopi
- Phakopsora euvitis
- Phakopsora fenestrala
- Phakopsora fici-erectae
- Phakopsora formosana
- Phakopsora glochidii
- Phakopsora hansfordii
- Phakopsora incompleta
- Phakopsora itoana
- Phakopsora jatrophicola
- Phakopsora meibomiae
- Phakopsora melaena
- Phakopsora melanotes
- Phakopsora meliosmae-myrianthae
- Phakopsora meliosmae
- Phakopsora mexicana
- Phakopsora neocherimoliae
- Phakopsora nyasalandica
- Phakopsora oplismeni
- Phakopsora pachyrhizi
- Phakopsora pallescens
- Phakopsora pavida
- Phakopsora phyllanthi
- Phakopsora psoraleae
- Phakopsora punctiformis
- Phakopsora rossmaniae
- Phakopsora setariae
- Phakopsora tecta
- Phakopsora venezuelana
- Phakopsora vernoniae
- Phakopsora vitis
- Phakopsora ziziphi-vulgaris