- Phaeosphaeria agminalis
- Phaeosphaeria alpina
- Phaeosphaeria anchiala
- Phaeosphaeria annulata
- Phaeosphaeria associata
- Phaeosphaeria bambusae
- Phaeosphaeria berlesei
- Phaeosphaeria caricicola
- Phaeosphaeria caricinella
- Phaeosphaeria caricis-firmae
- Phaeosphaeria caricis
- Phaeosphaeria cassiicola
- Phaeosphaeria consobrina
- Phaeosphaeria corallorhizae
- Phaeosphaeria culmorum
- Phaeosphaeria cyperina
- Phaeosphaeria elongata
- Phaeosphaeria epicalamia
- Phaeosphaeria equiseti
- Phaeosphaeria eustoma
- Phaeosphaeria fuckelii
- Phaeosphaeria gessneri
- Phaeosphaeria graminis
- Phaeosphaeria halima
- Phaeosphaeria heptamera
- Phaeosphaeria herpotrichoides
- Phaeosphaeria infuscans
- Phaeosphaeria insignis
- Phaeosphaeria juncicola
- Phaeosphaeria juncina
- Phaeosphaeria juncophila
- Phaeosphaeria kunzeana
- Phaeosphaeria larseniana
- Phaeosphaeria lindii
- Phaeosphaeria luctuosa
- Phaeosphaeria lycopodiicola
- Phaeosphaeria lycopodina
- Phaeosphaeria macrosporidium
- Phaeosphaeria marciensis
- Phaeosphaeria maritima
- Phaeosphaeria marram
- Phaeosphaeria maydis
- Phaeosphaeria microscopica
- Phaeosphaeria minuscula
- Phaeosphaeria mounceae
- Phaeosphaeria nardi
- Phaeosphaeria neomaritima
- Phaeosphaeria nigrans
- Phaeosphaeria nodorum
- Phaeosphaeria norfolcia
- Phaeosphaeria occidentalis
- Phaeosphaeria occulta
- Phaeosphaeria olivacea
- Phaeosphaeria oryzae
- Phaeosphaeria ovei
- Phaeosphaeria panici
- Phaeosphaeria papyricola
- Phaeosphaeria parvograminis
- Phaeosphaeria parvula
- Phaeosphaeria petkovicensis
- Phaeosphaeria physalidis
- Phaeosphaeria pleurospora
- Phaeosphaeria pontiformis
- Phaeosphaeria punctillum
- Phaeosphaeria roemeriani
- Phaeosphaeria rousseliana
- Phaeosphaeria salebricola
- Phaeosphaeria saxonica
- Phaeosphaeria scirpicola
- Phaeosphaeria silenes-acaulis
- Phaeosphaeria silvatica
- Phaeosphaeria sowerbyi
- Phaeosphaeria sparsa
- Phaeosphaeria spartinae
- Phaeosphaeria spartinicola
- Phaeosphaeria sporoboli
- Phaeosphaeria stellariae
- Phaeosphaeria thomasiana
- Phaeosphaeria tini
- Phaeosphaeria triglochinicola
- Phaeosphaeria typharum
- Phaeosphaeria vagans
- Phaeosphaeria viridella
- Phaeosphaeria volkartiana
- Phaeosphaeria weberi