- Macrophoma acuaria
- Macrophoma adenii
- Macrophoma antarctica
- Macrophoma ariae
- Macrophoma capsuligena
- Macrophoma depressula
- Macrophoma diospyri
- Macrophoma dracaenae-fragrantis
- Macrophoma dryadis
- Macrophoma edulis
- Macrophoma euphorbiae
- Macrophoma falconeri
- Macrophoma fraxini
- Macrophoma halstedii
- Macrophoma haraeana
- Macrophoma lilii
- Macrophoma livistonae
- Macrophoma maublancii
- Macrophoma nervicola
- Macrophoma obsoleta
- Macrophoma petrakiana
- Macrophoma polygonati
- Macrophoma punctiformis
- Macrophoma raphidophorae
- Macrophoma sphaeropsispora
- Macrophoma stanhopeicola
- Macrophoma strobi
- Macrophoma subconica
- Macrophoma sycophila
- Macrophoma thalictricola
- Macrophoma trichosanthis
- Macrophoma utriculorum
- Macrophoma viticola
- Macrophoma zeae