- Rhizophagus aeneus
- Rhizophagus approximatus
- Rhizophagus bipustulatus
- Rhizophagus brancsiki
- Rhizophagus brunneus
- Rhizophagus cribratus
- Rhizophagus cylindricus
- Rhizophagus depressus
- Rhizophagus dimidiatus
- Rhizophagus dispar
- Rhizophagus fenestralis
- Rhizophagus ferrugineus
- Rhizophagus galbus
- Rhizophagus grandis
- Rhizophagus grouvellei
- Rhizophagus longiceps
- Rhizophagus minutus
- Rhizophagus nitidulus
- Rhizophagus parallelocollis
- Rhizophagus parvulus
- Rhizophagus perforatus
- Rhizophagus picipes
- Rhizophagus procerus
- Rhizophagus pseudobrunneus
- Rhizophagus puncticollis
- Rhizophagus pusillus
- Rhizophagus rectus
- Rhizophagus remotus
- Rhizophagus sayi
- Rhizophagus sculpturatus
- Rhizophagus simplex
- Rhizophagus unicolor