- Microcyclops afghanicus
- Microcyclops alius
- Microcyclops anceps
- Microcyclops attenuatus
- Microcyclops bicolor
- Microcyclops ceibaensis
- Microcyclops diaphanus
- Microcyclops dubitabilis
- Microcyclops elongatus
- Microcyclops exiguus
- Microcyclops falsus
- Microcyclops finitimus
- Microcyclops gemellus
- Microcyclops intermedius
- Microcyclops jenkinae
- Microcyclops linjanticus
- Microcyclops microsetus
- Microcyclops obscuratus
- Microcyclops pachycomus
- Microcyclops pumilis
- Microcyclops rubellus
- Microcyclops tanganicae
- Microcyclops uenoi
- Microcyclops varicans